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csdata - Structural Data for Norway

Datasets relating to population in municipalities, municipality/county matching, and how different municipalities have merged/redistricted over time from 2006 to 2024.

Last updated

csverse

6.40 score 3 dependents 23 scripts 787 downloads

org - Organising Projects

A framework for organizing R projects with a standardized structure. Most analyses consist of three main components: code, results, and data, each with different requirements such as version control, sharing, and encryption. This package provides tools to set up and manage project directories, handle file paths consistently across operating systems, organize results using date-based structures, source code from specified directories, and perform file operations safely. It ensures consistency across projects while accommodating different requirements for various types of content.

Last updated

6.36 score 1 stars 65 scripts 753 downloads

plnr - A Framework for Planning and Executing Analyses

A comprehensive framework for planning and executing analyses in R. It provides a structured approach to running the same function multiple times with different arguments, executing multiple functions on the same datasets, and creating systematic analyses across multiple strata or variables. The framework is particularly useful for applying the same analysis across multiple strata (e.g., locations, age groups), running statistical methods on multiple variables (e.g., exposures, outcomes), generating multiple tables or graphs for reports, and creating systematic surveillance analyses. Key features include efficient data management, structured analysis planning, flexible execution options, built-in debugging tools, and hash-based caching.

Last updated

5.51 score 4 stars 5 scripts 744 downloads

csdb - An Abstracted System for Easily Working with Databases with Large Datasets

Provides object-oriented database management tools for working with large datasets across multiple database systems. Features include robust connection management for 'PostgreSQL' databases, advanced table operations with bulk data loading and upsert functionality, comprehensive data validation through customizable field type and content validators, efficient index management, and cross-database compatibility. Designed for high-performance data operations in surveillance systems and large-scale data processing workflows.

Last updated

csverse

5.13 score 1 stars 1 dependents 489 downloads

cs9 - A Framework for Real-Time Analysis and Disease Surveillance

A comprehensive framework for building real-time disease surveillance systems. Provides R6-based infrastructure for database-driven surveillance tasks, with support for parallel processing, data validation, and automated pipeline execution. Designed for epidemiological analysis and public health monitoring applications.

Last updated

4.00 score 3 scripts

cstime - Date and Time Functions for Public Health Purposes

Provides easy and consistent time conversion for public health purposes. The time conversion functions provided here are between date, ISO week, ISO yearweek, ISO year, calendar month/year, season, season week.

Last updated

3.95 score 2 dependents 10 scripts 788 downloads

csmaps - Preformatted Maps of Norway that Don't Need Geolibraries

Provides datasets containing preformatted maps of Norway at the county, municipality, and ward (Oslo only) level for redistricting in 2024, 2020, 2018, and 2017. Multiple layouts are provided (normal, split, and with an insert for Oslo), allowing the user to rapidly create choropleth maps of Norway without any geolibraries.

Last updated

3.93 score 1 stars 43 scripts 744 downloads

cstidy - Helpful Functions for Cleaning Surveillance Data

Helpful functions for the cleaning and manipulation of surveillance data, especially with regards to the creation and validation of panel data from individual level surveillance data.

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3.65 score 1 dependents 683 downloads

csstyle - Standardizing Outputs in the 'Core Surveillance' Style

A comprehensive styling system for consistent visual outputs using 'Core Surveillance' guidelines. Provides 'ggplot2' themes, color palettes, and dual formatting functions to standardize graphs, tables, and reports. Includes Norwegian formatting conventions for domestic use and international journal standards for academic publications. Features number formatting (percentages, per-100k rates, log transformations), date formatting (Norwegian vs ISO 8601), and a hierarchical color system. Focuses on consistency over flexibility to ensure reproducible, professional outputs across research contexts.

Last updated

csverse

3.60 score 1 stars 2 scripts

csutil - Common Base-R Problems Relating to Lists

Utility functions that help with common base-R problems relating to lists. Lists in base-R are very flexible. This package provides functions to quickly and easily characterize types of lists. That is, to identify if all elements in a list are null, data.frames, lists, or fully named lists. Other functionality is provided for the handling of lists, such as the easy splitting of lists into equally sized groups, and the unnesting of data.frames within fully named lists.

Last updated

3.18 score 1 dependents 2 scripts 797 downloads

csalert - Alerts from Public Health Surveillance Data

Helps create alerts and determine trends by using various methods to analyze public health surveillance data. The primary analysis method is based upon a published analytics strategy by Benedetti (2019) <doi:10.5588/pha.19.0002>.

Last updated

2.70 score 701 downloads

attrib - Attributable Burden of Disease

Provides functions for estimating the attributable burden of disease due to risk factors. The posterior simulation is performed using arm::sim as described in Gelman, Hill (2012) <doi:10.1017/CBO9780511790942> and the attributable burden method is based on Nielsen, Krause, Molbak <doi:10.1111/irv.12564>.

Last updated

2.70 score 5 scripts 857 downloads